NAG FL Interface
g11saf (binary)
1
Purpose
g11saf fits a latent variable model (with a single factor) to data consisting of a set of measurements on individuals in the form of binary-valued sequences (generally referred to as score patterns). Various measures of goodness-of-fit are calculated along with the factor (theta) scores.
2
Specification
Fortran Interface
Subroutine g11saf ( |
ip, n, gprob, ns, x, ldx, irl, a, c, iprint, cgetol, maxit, chisqr, ishow, niter, alpha, pigam, cm, ldcm, g, expp, ldexpp, obs, exf, y, xl, iob, rlogl, chi, idf, siglev, w, lw, ifail) |
Integer, Intent (In) |
:: |
ip, n, ns, ldx, iprint, maxit, ishow, ldcm, ldexpp, lw |
Integer, Intent (Inout) |
:: |
irl(ns), ifail |
Integer, Intent (Out) |
:: |
niter, iob(ns), idf |
Real (Kind=nag_wp), Intent (In) |
:: |
cgetol |
Real (Kind=nag_wp), Intent (Inout) |
:: |
a(ip), c(ip), cm(ldcm,2*ip), expp(ldexpp,ip), obs(ldexpp,ip) |
Real (Kind=nag_wp), Intent (Out) |
:: |
alpha(ip), pigam(ip), g(2*ip), exf(ns), y(ns), xl(ns), rlogl, chi, siglev, w(lw) |
Logical, Intent (In) |
:: |
gprob, chisqr |
Logical, Intent (Inout) |
:: |
x(ldx,ip) |
|
C Header Interface
#include <nag.h>
void |
g11saf_ (const Integer *ip, const Integer *n, const logical *gprob, const Integer *ns, logical x[], const Integer *ldx, Integer irl[], double a[], double c[], const Integer *iprint, const double *cgetol, const Integer *maxit, const logical *chisqr, const Integer *ishow, Integer *niter, double alpha[], double pigam[], double cm[], const Integer *ldcm, double g[], double expp[], const Integer *ldexpp, double obs[], double exf[], double y[], double xl[], Integer iob[], double *rlogl, double *chi, Integer *idf, double *siglev, double w[], const Integer *lw, Integer *ifail) |
|
C++ Header Interface
#include <nag.h> extern "C" {
void |
g11saf_ (const Integer &ip, const Integer &n, const logical &gprob, const Integer &ns, logical x[], const Integer &ldx, Integer irl[], double a[], double c[], const Integer &iprint, const double &cgetol, const Integer &maxit, const logical &chisqr, const Integer &ishow, Integer &niter, double alpha[], double pigam[], double cm[], const Integer &ldcm, double g[], double expp[], const Integer &ldexpp, double obs[], double exf[], double y[], double xl[], Integer iob[], double &rlogl, double &chi, Integer &idf, double &siglev, double w[], const Integer &lw, Integer &ifail) |
}
|
The routine may be called by the names g11saf or nagf_contab_binary.
3
Description
Given a set of
dichotomous variables
, where
denotes vector or matrix transpose, the objective is to investigate whether the association between them can be adequately explained by a latent variable model of the form (see
Bartholomew (1980) and
Bartholomew (1987))
The
are called item responses and take the value
or
.
denotes the latent variable assumed to have a standard Normal distribution over a population of individuals to be tested on
items. Call
the item response function: it represents the probability that an individual with latent ability
will produce a positive response
(1) to item
.
and
are item parameters which can assume any real values. The set of parameters,
, for
, being coefficients of the unobserved variable
, can be interpreted as ‘factor loadings’.
is a function selected by you as either
or logit, mapping the interval
onto the whole real line. Data from a random sample of
individuals takes the form of the matrices
and
defined below:
where
denotes the
th score pattern in the sample,
the frequency with which
occurs and
the number of different score patterns observed. (Thus
). It can be shown that the log-likelihood function is proportional to
where
(
being the probability density function of a standard Normal random variable).
denotes the unconditional probability of observing score pattern
. The integral in
(2) is approximated using Gauss–Hermite quadrature. If we take
in
(1) and reparameterise as follows,
then
(1) reduces to the logit model (see
Bartholomew (1980))
If we take
(where
is the cumulative distribution function of a standard Normal random variable) and reparameterise as follows,
then
(1) reduces to the probit model (see
Bock and Aitkin (1981))
An E-M algorithm (see
Bock and Aitkin (1981)) is used to maximize the log-likelihood function. The number of quadrature points used is set initially to
and once convergence is attained increased to
.
The theta score of an individual responding in score pattern is computed as the posterior mean, i.e., . For the logit model the component score is also calculated. (Note that in calculating the theta scores and measures of goodness-of-fit g11saf automatically reverses the coding on item if ; it is assumed in the model that a response at the one level is showing a higher measure of latent ability than a response at the zero level.)
The frequency distribution of score patterns is required as input data. If your data is in the form of individual score patterns (uncounted), then
g11sbf may be used to calculate the frequency distribution.
4
References
Bartholomew D J (1980) Factor analysis for categorical data (with Discussion) J. Roy. Statist. Soc. Ser. B 42 293–321
Bartholomew D J (1987) Latent Variable Models and Factor Analysis Griffin
Bock R D and Aitkin M (1981) Marginal maximum likelihood estimation of item parameters: Application of an E-M algorithm Psychometrika 46 443–459
5
Arguments
-
1:
– Integer
Input
-
On entry: , the number of dichotomous variables.
Constraint:
.
-
2:
– Integer
Input
-
On entry: , the number of individuals in the sample.
Constraint:
.
-
3:
– Logical
Input
-
On entry: must be set equal to .TRUE. if and .FALSE. if .
-
4:
– Integer
Input
-
On entry:
ns must be set equal to the number of different score patterns in the sample,
.
Constraint:
.
-
5:
– Logical array
Input/Output
-
On entry: the first
rows of
x must contain the
different score patterns. The
th row of
x must contain the
th score pattern with
set equal to .TRUE. if
and .FALSE. if
. All rows of
x must be distinct.
On exit: given a valid parameter set then the first
rows of
x still contain the
different score patterns. However, the following points should be noted:
-
(i)If the estimated factor loading for the th item is negative then that item is re-coded, i.e., s and s (or .TRUE. and .FALSE.) in the th column of x are interchanged.
-
(ii)The rows of x will be reordered so that the theta scores corresponding to rows of x are in increasing order of magnitude.
-
6:
– Integer
Input
-
On entry: the first dimension of the array
x as declared in the (sub)program from which
g11saf is called.
Constraint:
.
-
7:
– Integer array
Input/Output
-
On entry: the
th component of
irl must be set equal to the frequency with which the
th row of
x occurs.
Constraints:
- , for ;
- .
On exit: given a valid parameter set then the first
components of
irl are reordered as are the rows of
x.
-
8:
– Real (Kind=nag_wp) array
Input/Output
-
On entry: must be set equal to an initial estimate of . In order to avoid divergence problems with the E-M algorithm you are strongly advised to set all the to .
On exit:
contains the latest estimate of
, for
. (Because of possible recoding all elements of
a will be positive.)
-
9:
– Real (Kind=nag_wp) array
Input/Output
-
On entry: must be set equal to an initial estimate of . In order to avoid divergence problems with the E-M algorithm you are strongly advised to set all the to .
On exit: contains the latest estimate of , for .
-
10:
– Integer
Input
-
On entry: the frequency with which the maximum likelihood search routine is to be monitored.
- The search is monitored once every iprint iterations, and when the number of quadrature points is increased, and again at the final solution point.
- The search is monitored once at the final point.
- The search is not monitored at all.
iprint should normally be set to a small positive number.
Suggested value:
.
-
11:
– Real (Kind=nag_wp)
Input
-
On entry: the accuracy to which the solution is required.
If
cgetol is set to
and on exit
or
, then all elements of the gradient vector will be smaller than
in absolute value. For most practical purposes the value
should suffice. You should be wary of setting
cgetol too small since the convergence criterion may then have become too strict for the machine to handle.
If
cgetol has been set to a value which is less than the square root of the
machine precision,
, then
g11saf will use the value
instead.
-
12:
– Integer
Input
-
On entry: the maximum number of iterations to be made in the maximum likelihood search. There will be an error exit (see
Section 6) if the search routine has not converged in
maxit iterations.
Suggested value:
.
Constraint:
.
-
13:
– Logical
Input
-
On entry: if
chisqr is set equal to .TRUE., a likelihood ratio statistic will be calculated (see
chi).
If
chisqr is set equal to .FALSE., no such statistic will be calculated.
-
14:
– Integer
Input
-
On entry: indicates which of the following three quantities are to be printed before exit from the routine (given a valid parameter set):
-
(a)Table of maximum likelihood estimates and standard errors (as returned in the output arrays a, c, alpha, pigam and cm).
-
(b)Table of observed and expected first- and second-order margins (as returned in the output arrays expp and obs).
-
(c)Table of observed and expected frequencies of score patterns along with theta scores (as returned in the output arrays irl, exf, y, xl and iob) and the likelihood ratio statistic (if required).
- None of the above are printed.
- (a) only is printed.
- (b) only is printed.
- (c) only is printed.
- (a) and (b) are printed.
- (a) and (c) are printed.
- (b) and (c) are printed.
- (a), (b) and (c) are printed.
Constraint:
.
-
15:
– Integer
Output
-
On exit: given a valid parameter set then
niter contains the number of iterations performed by the maximum likelihood search routine.
-
16:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then
contains the latest estimate of
. (Because of possible recoding all elements of
alpha will be positive.)
-
17:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then contains the latest estimate of either if (logit model) or if (probit model).
-
18:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then the strict lower triangle of
cm contains the correlation matrix of the parameter estimates held in
alpha and
pigam on exit. The diagonal elements of
cm contain the standard errors. Thus:
| = | standard error |
| = | standard error |
| = | correlation , |
for
;
| = | correlation |
| = | correlation |
| = | correlation |
| = | correlation , |
for
.
If the second derivative matrix cannot be computed then all the elements of
cm are returned as zero.
-
19:
– Integer
Input
-
On entry: the first dimension of the array
cm as declared in the (sub)program from which
g11saf is called.
Constraint:
.
-
20:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then
g contains the estimated gradient vector corresponding to the final point held in the arrays
alpha and
pigam.
contains the derivative of the log-likelihood with respect to
, for
.
contains the derivative of the log-likelihood with respect to
, for
.
-
21:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then
contains the expected percentage of individuals in the sample who respond positively to items
and
(
), corresponding to the final point held in the arrays
alpha and
pigam.
-
22:
– Integer
Input
-
On entry: the first dimension of the array
obs and the first dimension of the array
expp as declared in the (sub)program from which
g11saf is called.
Constraint:
.
-
23:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then contains the observed percentage of individuals in the sample who responded positively to items and ().
-
24:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then
contains the expected frequency of the
th score pattern (
th row of
x), corresponding to the final point held in the arrays
alpha and
pigam.
-
25:
– Real (Kind=nag_wp) array
Output
-
On exit: given a valid parameter set then
contains the estimated theta score corresponding to the
th row of
x, for the final point held in the arrays
alpha and
pigam.
-
26:
– Real (Kind=nag_wp) array
Output
-
On exit: if
gprob has been set equal to .FALSE. (logit model) then, given a valid parameter set,
contains the estimated component score corresponding to the
th row of
x for the final point held in the arrays
alpha and
pigam.
If
gprob is set equal to .TRUE. (probit model), this array is not used.
-
27:
– Integer array
Output
-
On exit: given a valid parameter set then
contains the number of items in the
th row of
x for which the response was positive (.TRUE.).
-
28:
– Real (Kind=nag_wp)
Output
-
On exit: given a valid parameter set then
rlogl contains the value of the log-likelihood kernel corresponding to the final point held in the arrays
alpha and
pigam, namely
-
29:
– Real (Kind=nag_wp)
Output
-
On exit: if
chisqr was set equal to .TRUE. on entry, then given a valid parameter set,
chi will contain the value of the likelihood ratio statistic corresponding to the final parameter estimates held in the arrays
alpha and
pigam, namely
The summation is over those elements of
irl which are positive. If
is less than
, then adjacent score patterns are pooled (the score patterns in
x being first put in order of increasing theta score).
If
chisqr has been set equal to .FALSE., then
chi is not used.
-
30:
– Integer
Output
-
On exit: if
chisqr was set equal to .TRUE. on entry, then given a valid parameter set,
idf will contain the degrees of freedom associated with the likelihood ratio statistic,
chi.
| if ; |
| if , |
where
denotes the number of terms summed to calculate
chi (
only if there is no pooling).
If
chisqr has been set equal to .FALSE.,
idf is not used.
-
31:
– Real (Kind=nag_wp)
Output
-
On exit: if
chisqr was set equal to .TRUE. on entry, then given a valid parameter set,
siglev will contain the significance level of
chi based on
idf degrees of freedom. If
idf is zero or negative then
siglev is set to zero.
If
chisqr was set equal to .FALSE.,
siglev is not used.
-
32:
– Real (Kind=nag_wp) array
Workspace
-
33:
– Integer
Input
-
On entry: the dimension of the array
w as declared in the (sub)program from which
g11saf is called.
Constraint:
.
-
34:
– Integer
Input/Output
-
On entry:
ifail must be set to
,
. If you are unfamiliar with this argument you should refer to
Section 4 in the Introduction to the NAG Library FL Interface for details.
For environments where it might be inappropriate to halt program execution when an error is detected, the value
is recommended. If the output of error messages is undesirable, then the value
is recommended. Otherwise, because for this routine the values of the output arguments may be useful even if
on exit, the recommended value is
.
When the value is used it is essential to test the value of ifail on exit.
On exit:
unless the routine detects an error or a warning has been flagged (see
Section 6).
6
Error Indicators and Warnings
If on entry
or
, explanatory error messages are output on the current error message unit (as defined by
x04aaf).
Errors or warnings detected by the routine:
Note: in some cases g11saf may return useful information.
-
On entry, and .
Constraint: .
On entry,
and
.
Constraint: rows
and
of
x should not be identical.
On entry, .
Constraint: .
On entry, .
Constraint: , , , , , , or .
On entry, and .
Constraint: .
On entry, and .
Constraint:
On entry, and .
Constraint: .
On entry, and minimum value for .
Constraint: .
On entry, .
Constraint: .
On entry, .
Constraint: .
On entry, and .
Constraint: .
On entry, and .
Constraint: .
On entry, and .
Constraint: .
On entry, and .
Constraint: .
-
For at least one of the
ip items the responses are all at the same level.
-
maxit iterations have been performed:
. If steady increases in the log-likelihood kernel were monitored up to the point where this exit occurred, the exit probably occurred simply because
maxit was set too small, so the calculations should be restarted from the final point held in
a and
c. This type of exit may also indicate that there is no maximum to the likelihood surface.
-
One of the elements of
a has exceeded
in absolute. This is the Heywood case as described in
Section 9.3. If steady increases in the log-likelihood kernel were monitored up to the point where this exit occurred then this exit may indicate that there is no maximum to the likelihood surface. You are advised to restart the calculations from a different point to see whether the E-M algorithm moves off in the same direction.
-
Failure to invert Hessian matrix and
maxit iterations made:
. This indicates a failure to invert the second derivative matrix for calculating the variance-covariance matrix of parameter estimates in the specified number of iterations. The elements of
cm have been set to zero. Try restarting the calculations with a larger value for
maxit.
-
Failure to invert Hessian matrix plus Heywood case encountered. This indicates a failure to invert the second derivative matrix for calculating the variance-covariance matrix of parameter estimates. In addition, an element of
a has exceeded
in absolute value. The elements of
cm will have then been set to zero on exit. You are advised to restart the calculations from a different point to see whether the E-M algorithm moves off in the same direction.
-
statistic has less than one degree of freedom. The
statistic is meaningless and
siglev is set to zero. All other returned information should be correct.
An unexpected error has been triggered by this routine. Please
contact
NAG.
See
Section 7 in the Introduction to the NAG Library FL Interface for further information.
Your licence key may have expired or may not have been installed correctly.
See
Section 8 in the Introduction to the NAG Library FL Interface for further information.
Dynamic memory allocation failed.
See
Section 9 in the Introduction to the NAG Library FL Interface for further information.
7
Accuracy
On exit from
g11saf if
or
then the following condition will be satisfied:
If
or
on exit (i.e.,
maxit iterations have been performed but the above condition does not hold), then the elements in
a,
c,
alpha and
pigam may still be good approximations to the maximum likelihood estimates. You are advised to inspect the elements of
g to see whether this is confirmed.
8
Parallelism and Performance
g11saf is threaded by NAG for parallel execution in multithreaded implementations of the NAG Library.
g11saf makes calls to BLAS and/or LAPACK routines, which may be threaded within the vendor library used by this implementation. Consult the documentation for the vendor library for further information.
Please consult the
X06 Chapter Introduction for information on how to control and interrogate the OpenMP environment used within this routine. Please also consult the
Users' Note for your implementation for any additional implementation-specific information.
The number of iterations required in the maximum likelihood search depends upon the number of observed variables, , and the distance of the starting point you supplied from the solution. The number of multiplications and divisions performed in an iteration is proportional to .
You are strongly advised to use the recommended starting values for the elements of
a and
c. Divergence may result from values you supplied even if they are very close to the solution. Divergence may also occur when an item has nearly all its responses at one level.
As in normal factor analysis, Heywood cases can often occur, particularly when
is small and
not very big. To overcome this difficulty the maximum likelihood search routine is terminated when the absolute value of one of the
exceeds
.
You have the option of deciding whether to exit from
g11saf (by setting
on entry) or to permit
g11saf to proceed onwards as if it had exited normally from the maximum likelihood search routine (setting
on entry).
The elements in
a,
c,
alpha and
pigam may still be good approximations to the maximum likelihood estimates. You are advised to inspect the elements
g to see whether this is confirmed.
When is not very large compared to a goodness-of-fit statistic should not be calculated as many of the expected frequencies will then be less than .
The observed and expected
percentages of sample members responding to individual and pairs of items held in the arrays
obs and
expp on exit can be converted to observed and expected
numbers by multiplying all elements of these two arrays by
.
10
Example
A program to fit the logit latent variable model to the following data:
Index |
Score Pattern |
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Total |
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10.1
Program Text
10.2
Program Data
10.3
Program Results