NAG Library Routine Document

g22ydf  (lm_submodel)

1

Purpose

2

Specification

3

Description

4

References

5

Arguments

1:     $\mathbf{hform}$ – Type (c_ptr)Input

On entry: a G22 handle to the internal data structure containing a description of the required (sub)model ${\mathcal{M}}_S$, as returned in hform by g22yaf.

2:     $\mathbf{hxdesc}$ – Type (c_ptr)Input

On entry: a G22 handle to the internal data structure containing a description of the design matrix, $D$, as returned in hxdesc by g22ycf.

3:     $\mathbf{intcpt}$ – Character(*)Output

On exit: if $\mathbf{intcpt}=\text{'M'}$, in order to fit the model ${\mathcal{M}}_S$ to $D$ using $X$, any analysis routine should include an implicit mean effect (intercept term).

$\mathbf{intcpt}=\text{'Z'}$, if ${\mathcal{M}}_S$ does not include a mean effect or the mean effect has been explicitly included in the design matrix.

4:     $\mathbf{ip}$ – IntegerOutput

On exit: $p$, the number of parameters in the model specified in hform, including the intercept if one is present.

If $\mathbf{lisx}\ne 0$, if $\mathbf{intcpt}=\text{'Z'}$, $p={\sum }_{i=1}^{m_x}\mathbf{isx}\left(i\right)$, otherwise $p={\sum }_{i=1}^{m_x}\mathbf{isx}\left(i\right)+1$.

5:     $\mathbf{lisx}$ – IntegerInput

On entry: length of isx.

Constraint: $\mathbf{lisx}=0$ or $\mathbf{lisx}\ge m_x$, where $m_x$ is the number of columns in the design matrix $X$.

6:     $\mathbf{isx}\left(\mathbf{lisx}\right)$ – Integer arrayOutput

On exit: if $\mathbf{lisx}\ne 0$, an array indicating which columns of the design matrix form the model specified in hform.

$\mathbf{isx}\left(j\right)=0$

The $j$th column of the design matrix, $X$, should not be included in the analysis.

$\mathbf{isx}\left(j\right)=1$

The $j$th column of the design matrix, $X$, should be included in the analysis.

If $\mathbf{lisx}=0$, isx is not referenced.

7:     $\mathbf{lplab}$ – IntegerInput

On entry: the length of plab.

As $p\le m_x+1$, if labels are required, using $\mathbf{lplab}=m_x+1$ will always be sufficient.

Constraint: $\mathbf{lplab}=0$ or $\mathbf{lplab}\ge p$.

8:     $\mathbf{plab}\left(\mathbf{lplab}\right)$ – Character(*) arrayOutput

On exit: if $\mathbf{lplab}\ne 0$, the names associated with the $p$ parameters in the model.

If $\mathbf{intcpt}=\text{'Z'}$, the labels in plab are also the labels for the columns of design matrix used in the analysis.

If $\mathbf{intcpt}=\text{'M'}$, columns $\mathbf{plab}\left(2\right)$ to $\mathbf{plab}\left(p\right)$ are the corresponding column labels.

If a mean effect is present in $M_S$, the corresponding label is always in $\mathbf{plab}\left(1\right)$.

If $\mathbf{lplab}=0$, plab is not referenced.

9:     $\mathbf{lvinfo}$ – IntegerInput

On entry: the length of vinfo.

Let $n_T$ denote the number of terms in $M_S$, $n_{Tt}$ denote the number of variables in the $t$th term and $m_{xt}$ denote the number of columns of $X$ corresponding to the $t$th term. The required size of vinfo, denoted $a$ is given by:

$$a=\sum _{\mathit{t}=1}^{n_T}{m}_{xt}\left(1+3n_{Tt}\right)\text{.}$$

If the model includes a mean effect, $a$ should be incremented by one.

The values $n_T$, $n_{Tt}$ and $m_{xt}$ are not trivial to calculate as they require the formula describing the model to be fully expanded and the contrast / dummy variable encoding to be known. Therefore, if lisx, lplab or lvinfo are too small and $\mathbf{lvinfo}\ge 3$, $\mathbf{ifail}=\mathbf{92}$ is returned and the required sizes for these arrays are returned in $\mathbf{vinfo}\left(1\right)$, $\mathbf{vinfo}\left(2\right)$ and $\mathbf{vinfo}\left(3\right)$ respectively.

Constraint: $\mathbf{lvinfo}=0$ or $\mathbf{lvinfo}\ge a$.

10:   $\mathbf{vinfo}\left(\mathbf{lvinfo}\right)$ – Integer arrayOutput

On exit: if $\mathbf{lvinfo}\ne 0$, information encoding a description of the parameters in the model.

The encoding information can be extracted as follows:

(i)

Set $k=1$.

(ii)

Iterate $j$ from $1$ to $p$. 1. Set $b=\mathbf{vinfo}\left(k\right)$. 2. Increment $k$. 3. Iterate $i$ from $1$ to $b$. (a) Set $v_i=\mathbf{vinfo}\left(k\right)$. (b) Set $l_i=\mathbf{vinfo}\left(k+1\right)$. (c) Set $c_i=\mathbf{vinfo}\left(k+2\right)$. (d) Increment $k$ by $3$. 4. The $j$th model parameter corresponds to the interaction between the $b$ variables held in columns $v_1,v_2,\dots ,v_b$ of $D$. Therefore, $b=1$ indicates a main effect, $b=2$ a two-way interaction, etc.. If $b=0$, the $j$th model parameter corresponds to the mean effect. If $l_i=0$, the corresponding variable $v_i$ is binary, ordinal or continuous. Otherwise, $l_i$ is the level for the corresponding variable for model parameter $j$. $c_i$ is a numeric flag indicating the contrast used in the case of a categorical variable. With $c_i=0$ indicating that dummy variables were used for variable $v_i$ in this term. The remaining six types of contrast; treatment contrasts (with respect to the first and last levels), sum contrasts (with respect to the first and last levels), Helmert contrasts and polynomial contrasts, as described in g22ycf, are identified by the integers one to six respectively.

If $\mathbf{lvinfo}=0$, vinfo is not referenced.

11:   $\mathbf{ifail}$ – IntegerInput/Output

On entry: ifail must be set to $0$, $-1\text{ or }1$. If you are unfamiliar with this argument you should refer to Section 3.4 in How to Use the NAG Library and its Documentation for details.

For environments where it might be inappropriate to halt program execution when an error is detected, the value $-1\text{ or }1$ is recommended. If the output of error messages is undesirable, then the value $1$ is recommended. Otherwise, if you are not familiar with this argument, the recommended value is $0$. When the value $-\mathbf{1}\text{ or }\mathbf{1}$ is used it is essential to test the value of ifail on exit.

On exit: $\mathbf{ifail}=\mathbf{0}$ unless the routine detects an error or a warning has been flagged (see Section 6).

6

Error Indicators and Warnings

$\mathbf{ifail}=11$

hform has not been initialized or is corrupt.

$\mathbf{ifail}=12$

hform is not a G22 handle as generated by g22yaf.

$\mathbf{ifail}=13$

A variable name used when creating hform is not present in hxdesc.
Variable name: $〈\mathit{\text{value}}〉$.

$\mathbf{ifail}=14$

The model and the design matrix are not consistent. The design matrix was constructed in the presence of a mean effect and the model does not include a mean effect.

$\mathbf{ifail}=15$

The model and the design matrix are not consistent. The model includes a term not present in the design matrix.
Term: $〈\mathit{\text{value}}〉$.

$\mathbf{ifail}=16$

The model and the design matrix are not consistent.
Term: $〈\mathit{\text{value}}〉$.
This is likely due to the design matrix being constructed in the presence of either a mean effect or main effect that is not present in the model.

$\mathbf{ifail}=17$

The model and the design matrix are not consistent. The model specifies different contrasts to those used when the design matrix was constructed. The contrasts specified in hform will be ignored.

$\mathbf{ifail}=21$

hxdesc has not been initialized or is corrupt.

$\mathbf{ifail}=22$

hxdesc is not a G22 handle as generated by g22ycf.

$\mathbf{ifail}=41$

On entry, $\mathbf{lisx}=〈\mathit{\text{value}}〉$ and $m_x=〈\mathit{\text{value}}〉$.
Constraint: $\mathbf{lisx}=0$ or $\mathbf{lisx}\ge m_x$.

$\mathbf{ifail}=71$

On entry, $\mathbf{lplab}=〈\mathit{\text{value}}〉$ and $p=〈\mathit{\text{value}}〉$.
Constraint: $\mathbf{lplab}=0$ or $\mathbf{lplab}\ge p$.

$\mathbf{ifail}=81$

On entry, plab is too short to hold the parameter labels. Long labels will be truncated.
The longest parameter label is $〈\mathit{\text{value}}〉$.

$\mathbf{ifail}=91$

On entry, lvinfo is too small.
$\mathbf{lvinfo}=〈\mathit{\text{value}}〉$.
Constraint: $\mathbf{lvinfo}=0$ or $\mathbf{lvinfo}\ge 〈\mathit{\text{value}}〉$.

$\mathbf{ifail}=92$

On entry, one or more of lisx, lplab or lvinfo are nonzero, but too small.
Minimum values are zero, or $〈\mathit{\text{value}}〉$, $〈\mathit{\text{value}}〉$ and $〈\mathit{\text{value}}〉$ respectively.
The minimum values are returned in the first three elements of vinfo.

$\mathbf{ifail}=-99$

An unexpected error has been triggered by this routine. Please contact NAG.

See Section 3.9 in How to Use the NAG Library and its Documentation for further information.

$\mathbf{ifail}=-399$

Your licence key may have expired or may not have been installed correctly.

See Section 3.8 in How to Use the NAG Library and its Documentation for further information.

$\mathbf{ifail}=-999$

Dynamic memory allocation failed.

See Section 3.7 in How to Use the NAG Library and its Documentation for further information.

7

Accuracy

8

Parallelism and Performance

9

Further Comments

10

Example

10.1

Program Text

Program Text (g22ydfe.f90)

10.2

Program Data

Program Data (g22ydfe.d)

10.3

Program Results

Program Results (g22ydfe.r)