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NAG Toolbox: nag_eigen_real_gen_sparse_arnoldi (f02ek)
Purpose
nag_eigen_real_gen_sparse_arnoldi (f02ek) computes selected eigenvalues and eigenvectors of a real sparse general matrix.
Syntax
[
a,
nconv,
w,
v,
resid,
user,
ifail] = f02ek(
n,
a,
icolzp,
irowix,
nev,
ncv,
sigma,
monit,
option, 'nz',
nz, 'user',
user)
[
a,
nconv,
w,
v,
resid,
user,
ifail] = nag_eigen_real_gen_sparse_arnoldi(
n,
a,
icolzp,
irowix,
nev,
ncv,
sigma,
monit,
option, 'nz',
nz, 'user',
user)
Description
nag_eigen_real_gen_sparse_arnoldi (f02ek) computes selected eigenvalues and the corresponding right eigenvectors of a real sparse general matrix
:
A specified number, , of eigenvalues , or the shifted inverses , may be selected either by largest or smallest modulus, largest or smallest real part, or, largest or smallest imaginary part. Convergence is generally faster when selecting larger eigenvalues, smaller eigenvalues can always be selected by choosing a zero inverse shift (). When eigenvalues closest to a given real value are required then the shifted inverses of largest magnitude should be selected with shift equal to the required real value.
Note that even though is real, and may be complex. If is an eigenvector corresponding to a complex eigenvalue , then the complex conjugate vector is the eigenvector corresponding to the complex conjugate eigenvalue . The eigenvalues in a complex conjugate pair and are either both selected or both not selected.
The sparse matrix
is stored in compressed column storage (CCS) format. See
Compressed column storage (CCS) format in the F11 Chapter Introduction.
nag_eigen_real_gen_sparse_arnoldi (f02ek) uses an implicitly restarted Arnoldi iterative method to converge approximations to a set of required eigenvalues and corresponding eigenvectors. Further algorithmic information is given in
Further Comments while a fuller discussion is provided in the
F12 Chapter Introduction. If shifts are to be performed then operations using shifted inverse matrices are performed using a direct sparse solver; further information on the solver used is provided in the
F11 Chapter Introduction.
References
Golub G H and Van Loan C F (1996) Matrix Computations (3rd Edition) Johns Hopkins University Press, Baltimore
Lehoucq R B, Sorensen D C and Yang C (1998) ARPACK Users' Guide: Solution of Large-scale Eigenvalue Problems with Implicitly Restarted Arnoldi Methods SIAM, Philidelphia
Parameters
Compulsory Input Parameters
- 1:
– int64int32nag_int scalar
-
, the order of the matrix .
Constraint:
.
- 2:
– double array
-
The array of nonzero elements (and diagonal elements if a nonzero inverse shift is to be applied) of the by general matrix .
- 3:
– int64int32nag_int array
-
contains the index in
a of the start of column
, for
;
must contain the value
. Thus the number of nonzero elements in column
of
is
; when shifts are applied this includes diagonal elements irrespective of value. See
Compressed column storage (CCS) format in the F11 Chapter Introduction.
- 4:
– int64int32nag_int array
-
contains the row index for each entry in
a. See
Compressed column storage (CCS) format in the F11 Chapter Introduction.
- 5:
– int64int32nag_int scalar
-
The number of eigenvalues to be computed.
Constraint:
.
- 6:
– int64int32nag_int scalar
-
The dimension of the array
w.
the number of Arnoldi basis vectors to use during the computation.
At present there is no
a priori analysis to guide the selection of
ncv relative to
nev. However, it is recommended that
. If many problems of the same type are to be solved, you should experiment with increasing
ncv while keeping
nev fixed for a given test problem. This will usually decrease the required number of matrix-vector operations but it also increases the work and storage required to maintain the orthogonal basis vectors. The optimal ‘cross-over’ with respect to CPU time is problem dependent and must be determined empirically.
Constraint:
.
- 7:
– double scalar
-
If the
Shifted Inverse Real mode has been selected then
sigma contains the real shift used; otherwise
sigma is not referenced. This mode can be selected by setting the appropriate options in the user-supplied function
option.
- 8:
– function handle or string containing name of m-file
-
monit is used to monitor the progress of
nag_eigen_real_gen_sparse_arnoldi (f02ek).
monit may be the
dummy function
nag_eigen_arnoldi_monit_gen (f02ekz)
if no monitoring is actually required.
(
nag_eigen_arnoldi_monit_gen (f02ekz) is included in the NAG Toolbox.)
monit is called after the solution of each eigenvalue sub-problem and also just prior to return from
nag_eigen_real_gen_sparse_arnoldi (f02ek).
[istat, user] = monit(ncv, niter, nconv, w, rzest, istat, user)
Input Parameters
- 1:
– int64int32nag_int scalar
-
The dimension of the arrays
w and
rzest. The number of Arnoldi basis vectors used during the computation.
- 2:
– int64int32nag_int scalar
-
The number of the current Arnoldi iteration.
- 3:
– int64int32nag_int scalar
-
The number of converged eigenvalues so far.
- 4:
– complex array
-
The first
nconv elements of
w contain the converged approximate eigenvalues.
- 5:
– double array
-
The first
nconv elements of
rzest contain the Ritz estimates (error bounds) on the converged approximate eigenvalues.
- 6:
– int64int32nag_int scalar
-
Set to zero.
- 7:
– Any MATLAB object
monit is called from
nag_eigen_real_gen_sparse_arnoldi (f02ek) with the object supplied to
nag_eigen_real_gen_sparse_arnoldi (f02ek).
Output Parameters
- 1:
– int64int32nag_int scalar
-
If set to a nonzero value nag_eigen_real_gen_sparse_arnoldi (f02ek) returns immediately with .
- 2:
– Any MATLAB object
- 9:
– function handle or string containing name of m-file
-
You can supply non-default options to the Arnoldi eigensolver by repeated calls to
nag_sparseig_real_option (f12ad) from within
option. (Please note that it is only necessary to call
nag_sparseig_real_option (f12ad); no call to
nag_sparseig_real_init (f12aa) is required from within
option.) For example, you can set the mode to
Shifted Inverse Real, you can increase the
Iteration Limit beyond its default and you can print varying levels of detail on the iterative process using
Print Level.
If only the default options (including that the eigenvalues of largest magnitude are sought) are to be used then
option may be the dummy function
nag_eigen_arnoldi_option (f02eky) (
nag_eigen_arnoldi_option (f02eky) is included in the NAG Toolbox). See
Example for an example of using
option to set some non-default options.
[icomm, comm, istat, user] = option(icomm, comm, istat, user)
Input Parameters
- 1:
– int64int32nag_int array
-
Contains details of the default option set. This array must be passed as argument
icomm in any call to
nag_sparseig_real_option (f12ad).
- 2:
– double array
-
Contains details of the default option set. This array must be passed as argument
comm in any call to
nag_sparseig_real_option (f12ad).
- 3:
– int64int32nag_int scalar
-
Set to zero.
- 4:
– Any MATLAB object
option is called from
nag_eigen_real_gen_sparse_arnoldi (f02ek) with the object supplied to
nag_eigen_real_gen_sparse_arnoldi (f02ek).
Output Parameters
- 1:
– int64int32nag_int array
-
Contains data on the current options set which may be altered from the default set via calls to
nag_sparseig_real_option (f12ad).
- 2:
– double array
-
Contains data on the current options set which may be altered from the default set via calls to
nag_sparseig_real_option (f12ad).
- 3:
– int64int32nag_int scalar
-
If set to a nonzero value nag_eigen_real_gen_sparse_arnoldi (f02ek) returns immediately with .
- 4:
– Any MATLAB object
Optional Input Parameters
- 1:
– int64int32nag_int scalar
-
Default:
the dimension of the array
a and the dimension of the array
irowix. (An error is raised if these dimensions are not equal.)
The dimension of the array
a and the number of nonzero elements of the matrix
and, if a nonzero shifted inverse is to be applied, all diagonal elements. Each nonzero is counted once in the latter case.
Constraint:
.
- 2:
– Any MATLAB object
user is not used by
nag_eigen_real_gen_sparse_arnoldi (f02ek), but is passed to
monit and
option. Note that for large objects it may be more efficient to use a global variable which is accessible from the m-files than to use
user.
Output Parameters
- 1:
– double array
-
If a nonzero shifted inverse is to be applied then the diagonal elements of
have the shift value, as supplied in
sigma, subtracted.
- 2:
– int64int32nag_int scalar
-
The number of converged approximations to the selected eigenvalues. On successful exit, this will normally be either
nev or
depending on the number of complex conjugate pairs of eigenvalues returned.
- 3:
– complex array
-
The first
nconv elements contain the converged approximations to the selected eigenvalues. Since complex conjugate pairs of eigenvalues appear together, it is possible (given an odd number of converged real eigenvalues) for
nag_eigen_real_gen_sparse_arnoldi (f02ek) to return one more eigenvalue than requested.
- 4:
– double array
-
The first dimension of the array
v will be
.
The second dimension of the array
v will be
.
Contains the eigenvectors associated with the eigenvalue
, for
(stored in
w). For a real eigenvalue,
, the corresponding eigenvector is real and is stored in
, for
. For complex conjugate pairs of eigenvalues,
, the real and imaginary parts of the corresponding eigenvectors are stored, respectively, in
and
, for
. The imaginary parts stored are for the first of the conjugate pair of eigenvectors; the other eigenvector in the pair is obtained by negating these imaginary parts.
- 5:
– double array
-
The residual for the estimates to the eigenpair and is returned in , for .
- 6:
– Any MATLAB object
- 7:
– int64int32nag_int scalar
unless the function detects an error (see
Error Indicators and Warnings).
Error Indicators and Warnings
Errors or warnings detected by the function:
-
-
Constraint: .
-
-
Constraint: .
Constraint: .
-
-
On entry, in shifted inverse mode, the th diagonal element of is not defined.
-
-
Constraint: .
Constraint: .
Constraint: .
-
-
Constraint: .
-
-
Constraint: .
-
-
Constraint: .
Constraint: .
-
-
On entry, the matrix is nearly numerically singular and could not be inverted.
On entry, the matrix is numerically singular and could not be inverted. Try perturbing the value of .
-
-
User requested termination in
monit.
-
-
User requested termination in
option.
-
-
Constraint: .
-
-
The maximum number of iterations
, the optional parameter
Iteration Limit has been set.
-
-
An internal call to
nag_sparseig_real_iter (f12ab) returned with
.
This error should not occur. Please contact
NAG.
-
-
An internal call to
nag_sparseig_real_iter (f12ab) returned with
.
-
-
The maximum number of iterations has been reached.
-
-
No shifts could be applied during a cycle of the implicitly restarted Arnoldi iteration.
-
-
Could not build an Arnoldi factorization.
-
-
Error in internal call to compute eigenvalues and corresponding error bounds of the current upper Hessenberg matrix.
Please contact
NAG.
-
-
An internal call to
nag_sparseig_real_proc (f12ac) returned with
.
-
-
The number of eigenvalues found to sufficient accuracy is zero.
-
-
Internal inconsistency in the number of converged Ritz values.
-
-
During calculation of a real Schur form, there was a failure to compute eigenvalues in a total of iterations.
-
-
The computed Schur form could not be reordered by an internal call.
-
-
In calculating eigenvectors, an internal call returned with an error.
Please contact
NAG.
-
An unexpected error has been triggered by this routine. Please
contact
NAG.
-
Your licence key may have expired or may not have been installed correctly.
-
Dynamic memory allocation failed.
Accuracy
The relative accuracy of a Ritz value (eigenvalue approximation),
, is considered acceptable if its Ritz estimate
. The default value for
Tolerance is the
machine precision given by
nag_machine_precision (x02aj). The Ritz estimates are available via the
monit function at each iteration in the Arnoldi process, or can be printed by setting option
Print Level to a positive value.
Further Comments
nag_eigen_real_gen_sparse_arnoldi (f02ek) calls functions based on the ARPACK suite in
Chapter F12. These functions use an implicitly restarted Arnoldi iterative method to converge to approximations to a set of required eigenvalues (see the
F12 Chapter Introduction).
In the default
Regular mode, only matrix-vector multiplications are performed using the sparse matrix
during the Arnoldi process. Each iteration is therefore cheap computationally, relative to the alternative,
Shifted Inverse Real, mode described below. It is most efficient (i.e., the total number of iterations required is small) when the eigenvalues of largest magnitude are sought and these are distinct.
Although there is an option for returning the smallest eigenvalues using this mode (see
Smallest Magnitude option), the number of iterations required for convergence will be far greater or the method may not converge at all. However, where convergence is achieved,
Regular mode may still prove to be the most efficient since no inversions are required. Where smallest eigenvalues are sought and
Regular mode is not suitable, or eigenvalues close to a given real value are sought, the
Shifted Inverse Real mode should be used.
If the
Shifted Inverse Real mode is used (via a call to
nag_sparseig_real_option (f12ad) in
option) then the matrix
is used in linear system solves by the Arnoldi process. This is first factorized internally using the direct
factorization function
nag_sparse_direct_real_gen_lu (f11me). The condition number of
is then calculated by a call to
nag_sparse_direct_real_gen_cond (f11mg). If the condition number is too big then the matrix is considered to be nearly singular, i.e.,
is an approximate eigenvalue of
, and the function exits with an error. In this situation it is normally sufficient to perturb
by a small amount and call
nag_eigen_real_gen_sparse_arnoldi (f02ek) again. After successful factorization, subsequent solves are performed by calls to
nag_sparse_direct_real_gen_solve (f11mf).
Finally, nag_eigen_real_gen_sparse_arnoldi (f02ek) transforms the eigenvectors. Each eigenvector (real or complex) is normalized so that , and the element of largest absolute value is real.
The monitoring function
monit provides some basic information on the convergence of the Arnoldi iterations. Much greater levels of detail on the Arnoldi process are available via option
Print Level. If this is set to a positive value then information will be printed, by default, to standard output. The
Monitoring option may be used to select a monitoring
file by setting the option to a file identification (unit) number associated with
Monitoring (see
nag_file_open (x04ac)).
Example
This example computes the four eigenvalues of the matrix
which lie closest to the value
on the real line, and their corresponding eigenvectors, where
is the tridiagonal matrix with elements
Open in the MATLAB editor:
f02ek_example
function f02ek_example
fprintf('f02ek example results\n\n');
load('west0479.mat')
W = west0479;
[irow,icol,a] = find(W);
n = int64(size(W,1));
nnz = int64(size(irow,1));
irow(nnz+1:nnz+n) = (1:n);
icol(nnz+1:nnz+n) = (1:n);
a(nnz+1:nnz+n) = 0.0;
nnz = nnz + n;
irow = int64(irow);
icol = int64(icol);
dup = 'S';
zero = 'K';
[nnz, a, icol, irow, icolzp, ifail] = ...
f11za(...
n, nnz, a, icol, irow, dup, zero);
nev = int64(20);
ncv = int64(60);
sigma = 4.0;
user = [0, 500, 1, 0];
[a, nconv, w, v, resid, user, ifail] = ...
f02ek(...
n, a, icolzp, irow, nev, ncv, sigma, @monit, @option, 'user', user);
fprintf('\n The %d Ritz values closest to %8.2e are:\n', nconv, sigma);
disp(w(1:nconv));
fig1 = figure;
plot(w(1:nconv),'k+');
title('Eigenvalues of West0479 closest to (4,0)');
xlabel('real');
ylabel('imag');
function [istat, user] = monit(ncv, niter, nconv, w, rzest, istat, user);
if (user(4)>0)
if (niter==1 && user(3)>0)
fprintf('The following Ritz values (mu) are related to the\n');
fprintf('true eigenvalues (lambda) by lambda = sigma + 1/mu\n\n');
end
fprintf('Iteration number %d\n', niter);
fprintf(' Ritz values converged so far (%d):\n', nconv);
for i = 1:nconv
fprintf(' %4d (%13.5e,%13.5e)\n', i, real(w(i)), imag(w(i)));
end
fprintf(' Next (unconverged) Ritz value:\n');
fprintf(' %4d (%13.5e,%13.5e)\n', nconv+1, real(w(nconv+1)), ...
imag(w(nconv+1)));
end
istat = int64(0);
function [icomm, comm, istat, user] = option(icomm, comm, istat, user);
if (user(1)>0)
[icomm, comm, ifail] = ...
f12ad(strcat('Print Level=', int2str(user(1))), icomm, comm);
istat = max(istat,ifail);
end
if (user(2)>100)
[icomm, comm, ifail] = ...
f12ad(strcat('Iteration Limit=', int2str(user(2))), icomm, comm);
istat = max(istat,ifail);
end
if (user(3)>0)
[icomm, comm, ifail] = ...
f12ad('Shifted Inverse Real', icomm, comm);
istat = max(istat,ifail);
end
f02ek example results
The 20 Ritz values closest to 4.00e+00 are:
3.9852 + 0.0000i
4.7459 + 0.0000i
3.1237 - 0.1509i
3.1237 + 0.1509i
4.3290 - 1.0151i
4.3290 + 1.0151i
2.8651 - 0.6759i
2.8651 + 0.6759i
2.5930 + 0.0000i
5.4060 + 0.0000i
5.8229 + 0.0000i
2.3494 - 0.8839i
2.3494 + 0.8839i
2.2071 - 0.3953i
2.2071 + 0.3953i
2.5364 - 1.4458i
2.5364 + 1.4458i
2.0675 + 0.0000i
1.9248 - 0.2785i
1.9248 + 0.2785i
Optional Parameters
Internally
nag_eigen_real_gen_sparse_arnoldi (f02ek) calls functions from the suite
nag_sparseig_real_init (f12aa),
nag_sparseig_real_iter (f12ab),
nag_sparseig_real_proc (f12ac),
nag_sparseig_real_option (f12ad) and
nag_sparseig_real_monit (f12ae). Several optional parameters for these computational functions define choices in the problem specification or the algorithm logic. In order to reduce the number of formal arguments of
nag_eigen_real_gen_sparse_arnoldi (f02ek) these optional parameters are also used here and have associated
default values that are usually appropriate. Therefore, you need only specify those optional parameters whose values are to be different from their default values.
Optional parameters may be specified via the user-supplied function
option in the call to
nag_eigen_real_gen_sparse_arnoldi (f02ek).
option must be coded such that one call to
nag_sparseig_real_option (f12ad) is necessary to set each optional parameter. All optional parameters you do not specify are set to their default values.
The remainder of this section can be skipped if you wish to use the default values for all optional parameters.
The following is a list of the optional parameters available. A full description of each optional parameter is provided in
Description of the s.
Description of the Optional Parameters
For each option, we give a summary line, a description of the optional parameter and details of constraints.
The summary line contains:
- the keywords, where the minimum abbreviation of each keyword is underlined;
- a parameter value,
where the letters , and denote options that take character, integer and real values respectively;
- the default value, where the symbol is a generic notation for machine precision (see nag_machine_precision (x02aj)).
Keywords and character values are case and white space insensitive.
Advisory Default
If the optional parameter
List is set then optional parameter specifications are listed in a
List file by setting the option to a file identification (unit) number associated with
Advisory messages (see
nag_file_set_unit_advisory (x04ab) and
nag_file_open (x04ac)).
Defaults
This special keyword may be used to reset all optional parameters to their default values.
Iteration Limit
Default
The limit on the number of Arnoldi iterations that can be performed before nag_eigen_real_gen_sparse_arnoldi (f02ek) exits with
.
Largest Magnitude Default
Largest Imaginary
Largest Real
Smallest Imaginary
Smallest Magnitude
Smallest Real
The Arnoldi iterative method converges on a number of eigenvalues with given properties. The default is to compute the eigenvalues of largest magnitude using
Largest Magnitude. Alternatively, eigenvalues may be chosen which have
Largest Real part,
Largest Imaginary part,
Smallest Magnitude,
Smallest Real part or
Smallest Imaginary part.
Note that these options select the eigenvalue properties for eigenvalues of the linear operator determined by the computational mode and problem type.
Nolist Default
List
Normally each optional parameter specification is not printed to
the advisory channel
as it is supplied. Optional parameter
List may be used to enable printing and optional parameter
Nolist may be used to suppress the printing.
Monitoring Default
If
, monitoring information is output to channel number
during the solution of each problem; this may be the same as the
Advisory channel number. The type of information produced is dependent on the value of
Print Level, see the description of the optional parameter
Print Level for details of the information produced. Please see
nag_file_open (x04ac) to associate a file with a given channel number.
Print Level Default
This controls the amount of printing produced by
nag_eigen_real_gen_sparse_arnoldi (f02ek) as follows.
| No output except error messages. |
| The set of selected options. |
| Problem and timing statistics when all calls to nag_sparseig_real_iter (f12ab) have been completed. |
| A single line of summary output at each Arnoldi iteration. |
|
If
,
then at each iteration, the length and additional steps of the current Arnoldi factorization and the number of converged Ritz values; during re-orthogonalization, the norm of initial/restarted starting vector. |
| Problem and timing statistics on final exit from nag_sparseig_real_iter (f12ab). If , then at each iteration, the number of shifts being applied, the eigenvalues and estimates of the Hessenberg matrix , the size of the Arnoldi basis, the wanted Ritz values and associated Ritz estimates and the shifts applied; vector norms prior to and following re-orthogonalization. |
| If , then on final iteration, the norm of the residual; when computing the Schur form, the eigenvalues and Ritz estimates both before and after sorting; for each iteration, the norm of residual for compressed factorization and the compressed upper Hessenberg matrix ; during re-orthogonalization, the initial/restarted starting vector; during the Arnoldi iteration loop, a restart is flagged and the number of the residual requiring iterative refinement; while applying shifts, the indices of the shifts being applied. |
| If , then during the Arnoldi iteration loop, the Arnoldi vector number and norm of the current residual; while applying shifts, key measures of progress and the order of ; while computing eigenvalues of , the last rows of the Schur and eigenvector matrices; when computing implicit shifts, the eigenvalues and Ritz estimates of . |
| If , then during Arnoldi iteration loop: norms of key components and the active column of , norms of residuals during iterative refinement, the final upper Hessenberg matrix ; while applying shifts: number of shifts, shift values, block indices, updated matrix ; while computing eigenvalues of : the matrix , the computed eigenvalues and Ritz estimates. |
Regular Default
Shifted Inverse Real
These options define the computational mode which in turn defines the form of operation to be performed.
Given a standard eigenvalue problem in the form
then the following modes are available with the appropriate operator
.
Tolerance
Default
An approximate eigenvalue has deemed to have converged when the corresponding Ritz estimate is within
Tolerance relative to the magnitude of the eigenvalue.
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