G02LAF : NAG Library, Mark 24

2 Specification

SUBROUTINE G02LAF (

N, MX, X, LDX, ISX, IP, MY, Y, LDY, XBAR, YBAR, ISCALE, XSTD, YSTD, MAXFAC, XRES, LDXRES, YRES, LDYRES, W, LDW, P, LDP, T, LDT, C, LDC, U, LDU, XCV, YCV, LDYCV, IFAIL)

INTEGER	N, MX, LDX, ISX(MX), IP, MY, LDY, ISCALE, MAXFAC, LDXRES, LDYRES, LDW, LDP, LDT, LDC, LDU, LDYCV, IFAIL
REAL (KIND=nag_wp)	X(LDX,MX), Y(LDY,MY), XBAR(IP), YBAR(MY), XSTD(IP), YSTD(MY), XRES(LDXRES,IP), YRES(LDYRES,MY), W(LDW,MAXFAC), P(LDP,MAXFAC), T(LDT,MAXFAC), C(LDC,MAXFAC), U(LDU,MAXFAC), XCV(MAXFAC), YCV(LDYCV,MY)

3 Description

Let

X_{1}

be the mean-centred

n

m

data matrix

X

n

observations on

m

predictor variables. Let

Y_{1}

be the mean-centred

n

r

data matrix

Y

n

observations on

r

response variables.

The first of the

k

factors PLS methods extract from the data predicts both

X_{1}

and

Y_{1}

by regressing on

t_{1}

a column vector of

n

scores:

\begin{matrix} {\hat{X}}_{1} = t_{1} p_{1}^{T} \\ {\hat{Y}}_{1} = t_{1} c_{1}^{T}, & with ​ t_{1}^{T} t_{1} = 1, \end{matrix}

where the column vectors of

m

x

-loadings

p_{1}

and

r

y

-loadings

c_{1}

are calculated in the least squares sense:

\begin{matrix} p_{1}^{T} = t_{1}^{T} X_{1} \\ c_{1}^{T} = t_{1}^{T} Y_{1} . \end{matrix}

The

x

-score vector

t_{1} = X_{1} w_{1}

is the linear combination of predictor data

X_{1}

that has maximum covariance with the

y

-scores

u_{1} = Y_{1} c_{1}

, where the

x

-weights vector

w_{1}

is the normalised first left singular vector of

X_{1}^{T} Y_{1}

The method extracts subsequent PLS factors by repeating the above process with the residual matrices:

\begin{matrix} X_{i} = X_{i - 1} - {\hat{X}}_{i - 1} \\ Y_{i} = Y_{i - 1} - {\hat{Y}}_{i - 1}, i = 2, 3, \dots, k, \end{matrix}

and with orthogonal scores:

t_{i}^{T} t_{j} = 0, j = 1, 2, \dots, i - 1 .

Optionally, in addition to being mean-centred, the data matrices

X_{1}

and

Y_{1}

may be scaled by standard deviations of the variables. If data are supplied mean-centred, the calculations are not affected within numerical accuracy.

5 Parameters

1: N – INTEGERInput

On entry:

n

, the number of observations.

Constraint:

N > 1

2: MX – INTEGERInput

On entry: the number of predictor variables.

Constraint:

MX > 1

3: X(LDX,MX) – REAL (KIND=nag_wp) arrayInput

On entry:

X (i, j)

must contain the

i

th observation on the

j

th predictor variable, for

i = 1, 2, \dots, N

and

j = 1, 2, \dots, MX

4: LDX – INTEGERInput

On entry: the first dimension of the array X as declared in the (sub)program from which G02LAF is called.

Constraint:

LDX \geq N

5: ISX(MX) – INTEGER arrayInput

On entry: indicates which predictor variables are to be included in the model.

$ISX (j) = 1$: The $j$ th predictor variable (with variates in the $j$ th column of $X$ ) is included in the model.
$ISX (j) = 0$: Otherwise.

Constraint: the sum of elements in ISX must equal IP.

6: IP – INTEGERInput

On entry:

m

, the number of predictor variables in the model.

Constraint:

1 < IP \leq MX

7: MY – INTEGERInput

On entry:

r

, the number of response variables.

Constraint:

MY \geq 1

8: Y(LDY,MY) – REAL (KIND=nag_wp) arrayInput

On entry:

Y (i, j)

must contain the

i

th observation for the

j

th response variable, for

i = 1, 2, \dots, N

and

j = 1, 2, \dots, MY

9: LDY – INTEGERInput

On entry: the first dimension of the array Y as declared in the (sub)program from which G02LAF is called.

Constraint:

LDY \geq N

10: XBAR(IP) – REAL (KIND=nag_wp) arrayOutput

On exit: mean values of predictor variables in the model.

11: YBAR(MY) – REAL (KIND=nag_wp) arrayOutput

On exit: the mean value of each response variable.

12: ISCALE – INTEGERInput

On entry: indicates how predictor variables are scaled.

$ISCALE = 1$: Data are scaled by the standard deviation of variables.
$ISCALE = 2$: Data are scaled by user-supplied scalings.
$ISCALE = -1$: No scaling.

Constraint:

ISCALE = -1

1

2

13: XSTD(IP) – REAL (KIND=nag_wp) arrayInput/Output

On entry: if

ISCALE = 2

XSTD (j)

must contain the user-supplied scaling for the

j

th predictor variable in the model, for

j = 1, 2, \dots, IP

. Otherwise XSTD need not be set.

On exit: if

ISCALE = 1

, standard deviations of predictor variables in the model. Otherwise XSTD is not changed.

14: YSTD(MY) – REAL (KIND=nag_wp) arrayInput/Output

On entry: if

ISCALE = 2

YSTD (j)

must contain the user-supplied scaling for the

j

th response variable in the model, for

j = 1, 2, \dots, MY

. Otherwise YSTD need not be set.

On exit: if

ISCALE = 1

, the standard deviation of each response variable. Otherwise YSTD is not changed.

15: MAXFAC – INTEGERInput

On entry:

k

, the number of latent variables to calculate.

Constraint:

1 \leq MAXFAC \leq IP

16: XRES(LDXRES,IP) – REAL (KIND=nag_wp) arrayOutput

On exit: the predictor variables' residual matrix

X_{k}

17: LDXRES – INTEGERInput

On entry: the first dimension of the array XRES as declared in the (sub)program from which G02LAF is called.

Constraint:

LDXRES \geq N

18: YRES(LDYRES,MY) – REAL (KIND=nag_wp) arrayOutput

On exit: the residuals for each response variable,

Y_{k}

19: LDYRES – INTEGERInput

On entry: the first dimension of the array YRES as declared in the (sub)program from which G02LAF is called.

Constraint:

LDYRES \geq N

20: W(LDW,MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit: the

j

th column of

W

contains the

x

-weights

w_{j}

, for

j = 1, 2, \dots, MAXFAC

21: LDW – INTEGERInput

On entry: the first dimension of the array W as declared in the (sub)program from which G02LAF is called.

Constraint:

LDW \geq IP

22: P(LDP,MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit: the

j

th column of

P

contains the

x

-loadings

p_{j}

, for

j = 1, 2, \dots, MAXFAC

23: LDP – INTEGERInput

On entry: the first dimension of the array P as declared in the (sub)program from which G02LAF is called.

Constraint:

LDP \geq IP

24: T(LDT,MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit: the

j

th column of

T

contains the

x

-scores

t_{j}

, for

j = 1, 2, \dots, MAXFAC

25: LDT – INTEGERInput

On entry: the first dimension of the array T as declared in the (sub)program from which G02LAF is called.

Constraint:

LDT \geq N

26: C(LDC,MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit: the

j

th column of

C

contains the

y

-loadings

c_{j}

, for

j = 1, 2, \dots, MAXFAC

27: LDC – INTEGERInput

On entry: the first dimension of the array C as declared in the (sub)program from which G02LAF is called.

Constraint:

LDC \geq MY

28: U(LDU,MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit: the

j

th column of

U

contains the

y

-scores

u_{j}

, for

j = 1, 2, \dots, MAXFAC

29: LDU – INTEGERInput

On entry: the first dimension of the array U as declared in the (sub)program from which G02LAF is called.

Constraint:

LDU \geq N

30: XCV(MAXFAC) – REAL (KIND=nag_wp) arrayOutput

On exit:

XCV (j)

contains the cumulative percentage of variance in the predictor variables explained by the first

j

factors, for

j = 1, 2, \dots, MAXFAC

31: YCV(LDYCV,MY) – REAL (KIND=nag_wp) arrayOutput

On exit:

YCV (i, j)

is the cumulative percentage of variance of the

j

th response variable explained by the first

i

factors, for

i = 1, 2, \dots, MAXFAC

and

j = 1, 2, \dots, MY

32: LDYCV – INTEGERInput

On entry: the first dimension of the array YCV as declared in the (sub)program from which G02LAF is called.

Constraint:

LDYCV \geq MAXFAC

33: IFAIL – INTEGERInput/Output

On entry: IFAIL must be set to

0

- 1 ​ or ​ 1

. If you are unfamiliar with this parameter you should refer to Section 3.3 in the Essential Introduction for details.

For environments where it might be inappropriate to halt program execution when an error is detected, the value

- 1 ​ or ​ 1

is recommended. If the output of error messages is undesirable, then the value

1

is recommended. Otherwise, if you are not familiar with this parameter, the recommended value is

0

. When the value $- 1 or 1$ is used it is essential to test the value of IFAIL on exit.

On exit:

IFAIL = 0

unless the routine detects an error or a warning has been flagged (see Section 6).

6 Error Indicators and Warnings

If on entry

IFAIL = 0

- 1

, explanatory error messages are output on the current error message unit (as defined by X04AAF).

Errors or warnings detected by the routine:

IFAIL = 1

On entry,	$N < 2$ ,
or	$MX < 2$ ,
or	an element of $ISX \neq 0$ or $1$ ,
or	$MY < 1$ ,
or	$ISCALE \neq -1$ , $1$ or $2$ .

IFAIL = 2

On entry,	$LDX < N$ ,
or	$IP < 2$ or $IP > MX$ ,
or	$LDY < N$ ,
or	$MAXFAC < 1$ or $MAXFAC > IP$ ,
or	$LDXRES < N$ ,
or	$LDYRES < N$ ,
or	$LDW < IP$ ,
or	$LDP < IP$ ,
or	$LDC < MY$ ,
or	$LDT < N$ ,
or	$LDU < N$ ,
or	$LDYCV < MAXFAC$ .

IFAIL = 3

IP does not equal the sum of elements in ISX.

NAG Library Routine Document

G02LAF

+− Contents

1 Purpose

2 Specification

3 Description

4 References

5 Parameters

6 Error Indicators and Warnings

7 Accuracy

8 Further Comments

9 Example

9.1 Program Text

9.2 Program Data

9.3 Program Results

NAG Library Routine DocumentG02LAF

+− Contents

1 Purpose

2 Specification

3 Description

4 References

5 Parameters

6 Error Indicators and Warnings

7 Accuracy

8 Further Comments

9 Example

9.1 Program Text

9.2 Program Data

9.3 Program Results

NAG Library Routine Document

G02LAF